Proteins on genomes.jbrowse.org

3 videos in this tutorial

JBrowse v5 beta

The tutorials target the JBrowse v5 beta, and the v4.3.0 release on the download page lacks some of what they show. To install the beta of JBrowse Web, run npm install -g @jbrowse/cli@next, then jbrowse create jbrowse2 --branch v5.0.0-beta.13. Desktop beta builds are coming soon.

genomes.jbrowse.org loads the protein3d and msaview plugins, so you can open any gene in a linear genome view as a 3D structure or as a cross-species protein MSA. Both views stay linked to the genome, so hovering a variant highlights the residue it lands on. We start from the protein browser, which builds that session from a gene symbol, then make the same views by hand for TP53 as an AlphaFold structure and NLRP1 as an MSA, and read the MSA's domains back on the genome.

Prerequisites

the protein3d and msaview plugins. In your own JBrowse, install both from the plugin store (Adding the plugins to your own instance); genomes.jbrowse.org already loads them

Where the data comes from

Nothing to download: the protein3d and msaview plugins fetch from these services, per gene, when you launch a structure or an alignment. The examples launch from the gene track in the hosted hg38 config on genomes.jbrowse.org.

The files

AlphaFold DB, where a launched structure comes from: https://alphafold.ebi.ac.uk/
UniProt, the isoform mapping and the projected Domains, Chains, Mutations and AA Modifications tracks: https://www.uniprot.org/
NCBI's ortholog report, the MSA's rows: https://www.ncbi.nlm.nih.gov/datasets/docs/v2/reference-docs/rest-api/
NCBI's Conserved Domain Database, the alignment's overlay: https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml

Opening a gene in the protein browser

Open the protein browser and search for TP53, or arrive with the gene resolved at ?gene=TP53. The browser builds one session with three linked views: the coding exons back to back in a linear genome view, the AlphaFold structure, and a cross-species protein alignment. Hover a residue in any of them and its codon lights up in the other two.

Two controls on the page shape the session:

Opens on takes a residue: ?gene=TP53&residue=248&align=live opens on R248 with TP53's orthologs from NCBI, which Build cross-species alignment aligns.
Open in JBrowse hands the session to the full app, where every view takes the menus described below.

TP53 as the protein browser lays it out: the coding exons back to back above ClinVar and AlphaMissense, an alignment of TP53's NCBI orthologs under them, and the AlphaFold structure beside. R248 is magenta on the structure and a line through its codon in the genome view. Open this view in JBrowse ↗ (large dataset — this session takes a while to load)

The rest of the page makes these views one at a time from the hosted hg38 genome view, which is the route for a gene or track the protein browser does not cover.

Launching a structure

Open hg38 on genomes.jbrowse.org and type TP53 into the location box. The hosted config ships a name index, so gene symbols resolve.¹

Right-click the gene. The menu has Launch protein view from protein3d and Launch MSA view from msaview, which the next section covers. Choose Launch protein view.

The dialog opens on its AlphaFoldDB search tab:

Look up from the feature's identifiers (selected) maps the transcript's accession to UniProt entries and picks the reviewed one.
Choose transcript isoform opens on the isoform you right-clicked, picks which transcript becomes the query, and tags the isoforms whose translation matches the structure's residues.
Launch renders the structure with Mol*.

When a structure's sequence differs from the transcript's translation, the dialog aligns them in the browser. Import manual alignment... in the view menu takes a pairwise alignment of your own in Clustal format instead.

TP53 on the hosted hg38 with NCBI RefSeq and ClinVar loaded: the right-click launcher, the dialog resolving a UniProt entry and an isoform, and the structure Launch renders. Hovering a coding position afterwards picks out its residue on the structure and in the alignment above it; the intron between the two exons picks out nothing.

Video

Open the session the video starts in ↗, then take the steps it shows:

Right-click TP53 and launch its protein structure
Hover a coding position: the structure lights its residue
An intron maps to no residue
Each coding base of the genome maps to one residue of the structure

Steps

Open this view in JBrowse Web ↗ · Open this view in JBrowse Desktop ↗

Desktop link does nothing?

It needs JBrowse Desktop 5.0+. Or paste this link into Desktop's Open JBrowse Web link... (start screen, or File → Session):

https://jbrowse.org/code/jb2/latest/?config=https%3A%2F%2Fjbrowse.org%2Fucsc%2Fhg38%2Fconfig.json&session=spec-%7B%22views%22%3A%5B%7B%22type%22%3A%22LinearGenomeView%22%2C%22assembly%22%3A%22hg38%22%2C%22loc%22%3A%22chr17%3A7%2C674%2C400-7%2C676%2C600%22%2C%22tracks%22%3A%5B%7B%22trackId%22%3A%22hg38-ncbiRefSeqCurated%22%2C%22geneGlyphMode%22%3A%22longestCoding%22%2C%22height%22%3A60%7D%2C%7B%22trackId%22%3A%22hg38-clinvarMain%22%2C%22height%22%3A90%7D%5D%7D%5D%7D&sessionName=JBrowse+docs%3A+proteins%2Fgenomes_protein_launch

The short route: open the view in JBrowse Web, where File → Open track... adds your own files beside its hosted genome and tracks.

From scratch with your own data, the steps behind the figure:

Open your genome: on the JBrowse Desktop start screen click Open new genome (or Show all available genomes to pick a hosted one). For JBrowse Web, jbrowse add-assembly puts it in your config.json.This figure uses hg38, loaded from a .2bit genome.
Add a track: check one your config has in the track selector, or File → Open track... to paste a URL or choose a local file. This one needs a bgzip-compressed, tabix-indexed GFF3 (.gff.gz + .tbi).This figure uses “NCBI RefSeq - RefSeq Curated”.
1. Track menu → Gene glyph → Representative transcript
Add the next track the same way. This one needs a BigBed file (.bb).This figure uses “ClinVar Variants - ClinVar SNVs”.
Type your region of interest into the location box and press Enter.This figure is at chr17:7,674,400-7,676,600.

Spec

This session spec draws the figure. It goes after &session=spec- on a JBrowse Web link that loads https://jbrowse.org/ucsc/hg38/config.json, which is what the Web button above opens.

{
  "views": [
    {
      "type": "LinearGenomeView",
      "assembly": "hg38",
      "loc": "chr17:7,674,400-7,676,600",
      "tracks": [
        {
          "trackId": "hg38-ncbiRefSeqCurated",
          "geneGlyphMode": "longestCoding",
          "height": 60
        },
        {
          "trackId": "hg38-clinvarMain",
          "height": 90
        }
      ]
    }
  ]
}

Notebook

The same view with jbrowse-anywidget, from the config the figure loads. Swap a track's uri for your own file.

from jbrowse_anywidget import JBrowseApp, fetch_hub

config = fetch_hub("https://jbrowse.org/ucsc/hg38/config.json")
app = JBrowseApp(
    assemblies=config["assemblies"],
    tracks=config.get("tracks", []),
    views=[
        {
            "type": "LinearGenomeView",
            "assembly": "hg38",
            "loc": "chr17:7,674,400-7,676,600",
            "tracks": [
                {
                    "trackId": "hg38-ncbiRefSeqCurated",
                    "geneGlyphMode": "longestCoding",
                    "height": 60
                },
                {
                    "trackId": "hg38-clinvarMain",
                    "height": 90
                }
            ]
        }
    ],
)
app  # display the widget

Image

jbrowse-img draws the same view as an SVG, from the command line and without a browser. Point --config at your own config, or swap a track for your own file with --bam, --vcfgz and the other file flags.

npx @jbrowse/img --config https://jbrowse.org/ucsc/hg38/config.json \
  --assembly hg38 --loc chr17:7,674,400-7,676,600 \
  --track hg38-ncbiRefSeqCurated '{"geneGlyphMode":"longestCoding","height":60}' \
  --track hg38-clinvarMain '{"height":90}' \
  --width 1920 --out figure.svg

--out figure.png writes a PNG instead, through rsvg-convert (apt install librsvg2-bin, brew install librsvg).

Agent

Hand this to a coding agent. It rebuilds the figure above headlessly, and the session file is then the thing to edit: change the location or a track's settings, or add your own track under sessionTracks, and rerun.

cat > session.json <<'JSON'
{
  "views": [
    {
      "type": "LinearGenomeView",
      "assembly": "hg38",
      "loc": "chr17:7,674,400-7,676,600",
      "tracks": [
        {
          "trackId": "hg38-ncbiRefSeqCurated",
          "geneGlyphMode": "longestCoding",
          "height": 60
        },
        {
          "trackId": "hg38-clinvarMain",
          "height": 90
        }
      ]
    }
  ]
}
JSON

npx @jbrowse/capture --instance https://jbrowse.org/code/jb2/latest/ \
  --config https://jbrowse.org/ucsc/hg38/config.json \
  --width 1920 --height 1400 \
  --spec session.json -o figure.png

Using JBrowse with AI agents covers the rest: hosted genomes to point it at, and why waiting for the render is the part that goes wrong.

The structure opens with the genome view still above it. Hovering a genomic position highlights the matching residue on the structure, on the pairwise alignment above it and in the per-residue tracks, and hovering the structure highlights the genomic position. g2p_mapper maps a position to a residue through the transcript's CDS, so introns, UTRs and residues missing from the structure highlight nothing. Each missing residue shows as a gap in the Pairwise alignment panel. The lookup needs a gene feature with a recognizable protein or transcript ID, which the RefSeq gene tracks on the hosted configs have.

The protein view also has per-residue tracks for pLDDT (AlphaFold's confidence), domains, helices and hydrophobicity. Open side by side, at the foot of the list the arrow beside the dialog's Launch button opens, puts the protein view beside the genome view. Click the nuclear export signal on the alignment panel's Motif row to select its residues and band their codons on the gene.

A connected session on human TP53 (UniProt P04637), NCBI RefSeq above the AlphaFold structure. A motif clicked on the protein's feature track selects its residues on the structure and bands the codons they came from on the gene.

Other views and structure sources in the Launch dialog

The arrow beside Launch lists everything the dialog can build.

Launch 1D protein annotation view opens a linear genome view whose genome is the protein, because the plugin registers the UniProt accession as a temporary assembly with the amino-acid sequence as its reference, so coordinates are residues. The view has a track per UniProt feature type, plus Antigen, Variation, AlphaFold confidence (pLDDT) and AlphaMissense (variant effect) scores. None is on at first, so turn them on in the track selector under Session tracks.

TP53 on hg38 above the 1D protein view its gene menu launched, with four of the session tracks turned on: the DNA binding call, UniProt natural variants, AlphaFold pLDDT and AlphaMissense substitution scores, all in residue coordinates. Confidence and variant density both fall away over the terminal tails.

TP53's launch dialog opened on the arrow beside Launch, then the 1D annotation view.

Video

Open the session the video starts in ↗, then take the steps it shows:

Open a view whose genome is the protein itself
The arrow beside Launch holds the 1D annotation view
It opens on the amino-acid chain, with its tracks off
Turn on four tracks from UniProt and AlphaFold
A binding region, variants and two AlphaFold scores, residue by residue

Steps

Open this view in JBrowse Web ↗ · Open this view in JBrowse Desktop ↗

Desktop link does nothing?

It needs JBrowse Desktop 5.0+. Or paste this link into Desktop's Open JBrowse Web link... (start screen, or File → Session):

https://jbrowse.org/code/jb2/main/?config=https%3A%2F%2Fjbrowse.org%2Fucsc%2Fhg38%2Fconfig.json&session=spec-%7B%22views%22%3A%5B%7B%22type%22%3A%22LinearGenomeView%22%2C%22assembly%22%3A%22hg38%22%2C%22loc%22%3A%22chr17%3A7%2C668%2C000-7%2C688%2C000%22%2C%22tracks%22%3A%5B%7B%22trackId%22%3A%22hg38-ncbiRefSeqCurated%22%2C%22geneGlyphMode%22%3A%22longestCoding%22%2C%22height%22%3A60%7D%5D%7D%5D%7D&sessionName=JBrowse+docs%3A+proteins%2Fannotation_1d

The short route: open the view in JBrowse Web, where File → Open track... adds your own files beside its hosted genome and tracks.

From scratch with your own data, the steps behind the figure:

Open your genome: on the JBrowse Desktop start screen click Open new genome (or Show all available genomes to pick a hosted one). For JBrowse Web, jbrowse add-assembly puts it in your config.json.This figure uses hg38, loaded from a .2bit genome.
Add a track: check one your config has in the track selector, or File → Open track... to paste a URL or choose a local file. This one needs a bgzip-compressed, tabix-indexed GFF3 (.gff.gz + .tbi).This figure uses “NCBI RefSeq - RefSeq Curated”.
1. Track menu → Gene glyph → Representative transcript
Type your region of interest into the location box and press Enter.This figure is at chr17:7,668,000-7,688,000.

Spec

This session spec draws the figure. It goes after &session=spec- on a JBrowse Web link that loads https://jbrowse.org/ucsc/hg38/config.json, which is what the Web button above opens.

{
  "views": [
    {
      "type": "LinearGenomeView",
      "assembly": "hg38",
      "loc": "chr17:7,668,000-7,688,000",
      "tracks": [
        {
          "trackId": "hg38-ncbiRefSeqCurated",
          "geneGlyphMode": "longestCoding",
          "height": 60
        }
      ]
    }
  ]
}

Notebook

The same view with jbrowse-anywidget, from the config the figure loads. Swap a track's uri for your own file.

from jbrowse_anywidget import JBrowseApp, fetch_hub

config = fetch_hub("https://jbrowse.org/ucsc/hg38/config.json")
app = JBrowseApp(
    assemblies=config["assemblies"],
    tracks=config.get("tracks", []),
    views=[
        {
            "type": "LinearGenomeView",
            "assembly": "hg38",
            "loc": "chr17:7,668,000-7,688,000",
            "tracks": [
                {
                    "trackId": "hg38-ncbiRefSeqCurated",
                    "geneGlyphMode": "longestCoding",
                    "height": 60
                }
            ]
        }
    ],
)
app  # display the widget

Image

npx @jbrowse/img --config https://jbrowse.org/ucsc/hg38/config.json \
  --assembly hg38 --loc chr17:7,668,000-7,688,000 \
  --track hg38-ncbiRefSeqCurated '{"geneGlyphMode":"longestCoding","height":60}' \
  --width 1920 --out figure.svg

--out figure.png writes a PNG instead, through rsvg-convert (apt install librsvg2-bin, brew install librsvg).

Agent

cat > session.json <<'JSON'
{
  "views": [
    {
      "type": "LinearGenomeView",
      "assembly": "hg38",
      "loc": "chr17:7,668,000-7,688,000",
      "tracks": [
        {
          "trackId": "hg38-ncbiRefSeqCurated",
          "geneGlyphMode": "longestCoding",
          "height": 60
        }
      ]
    }
  ]
}
JSON

npx @jbrowse/capture --instance https://jbrowse.org/code/jb2/main/ \
  --config https://jbrowse.org/ucsc/hg38/config.json \
  --width 1920 --height 1170 \
  --spec session.json -o figure.png

Using JBrowse with AI agents covers the rest: hosted genomes to point it at, and why waiting for the render is the part that goes wrong.

The dialog's other tabs take a structure from elsewhere:

PDB search lists the experimental structures PDBe maps to the protein's UniProt entry
Foldseek search finds structures similar to the protein's
File or URL takes a PDB or mmCIF file of yours

Launching an MSA

On the gene's right-click menu, Launch MSA view builds a cross-species protein MSA from the ortholog gene NCBI publishes per species for most annotated genes. The dialog opens on its Orthologs tab, and these fields matter:

Query species is the species the gene came from, free text resolved against NCBI's taxonomy: a scientific name, a common name or a taxon id
Rows to align is how many species to build. NCBI orders its ortholog report from the reference organisms outward, so this takes the closest N
Choose isoform picks which transcript becomes the query row, the one the genome view stays linked to
MSA Algorithm sets which aligner EBI runs, Clustal Omega by default
BLAST query, a separate tab, takes a gene with no resolvable symbol

Press Submit. A multiple sequence alignment view opens below the genome view, with a tree on the left, the alignment beside it, and the conserved-domain overlay drawn over the residues once NCBI returns it.

The view opens at residue zoom, a window on the N terminus of a long protein. Fit horizontally, under the toolbar's fit and zoom button, puts the whole alignment on screen, which is the zoom the domain blocks read at.

Each panel's menu has Arrange all views → Side by side, so a hover reaches the genome, alignment and structure views at once.

TP53's gene menu launching both an alignment and a structure, then Arrange all views → Side by side arranging the genome, the alignment and the structure in three columns. One hover in the genome moves the highlighted column in the alignment and the highlighted residue on the structure together.

Video

Open the session the video starts in ↗, then take the steps it shows:

Align TP53 with 15 of its orthologs from the gene's menu
Then launch its AlphaFold structure the same way
Tile the three views side by side
Hover a coding position: the alignment and structure follow
One genome position: one alignment column, one residue on the structure

Steps

Open this view in JBrowse Web ↗ · Open this view in JBrowse Desktop ↗

Desktop link does nothing?

It needs JBrowse Desktop 5.0+. Or paste this link into Desktop's Open JBrowse Web link... (start screen, or File → Session):

https://jbrowse.org/code/jb2/main/?config=https%3A%2F%2Fjbrowse.org%2Fucsc%2Fhg38%2Fconfig.json&session=spec-%7B%22views%22%3A%5B%7B%22type%22%3A%22LinearGenomeView%22%2C%22assembly%22%3A%22hg38%22%2C%22loc%22%3A%22chr17%3A7%2C674%2C400-7%2C676%2C600%22%2C%22tracks%22%3A%5B%7B%22trackId%22%3A%22hg38-ncbiRefSeqCurated%22%2C%22geneGlyphMode%22%3A%22longestCoding%22%2C%22height%22%3A60%7D%2C%7B%22trackId%22%3A%22hg38-clinvarMain%22%2C%22height%22%3A90%7D%5D%7D%5D%7D&sessionName=JBrowse+docs%3A+proteins%2Ftiled_views

The short route: open the view in JBrowse Web, where File → Open track... adds your own files beside its hosted genome and tracks.

From scratch with your own data, the steps behind the figure:

Open your genome: on the JBrowse Desktop start screen click Open new genome (or Show all available genomes to pick a hosted one). For JBrowse Web, jbrowse add-assembly puts it in your config.json.This figure uses hg38, loaded from a .2bit genome.
Add a track: check one your config has in the track selector, or File → Open track... to paste a URL or choose a local file. This one needs a bgzip-compressed, tabix-indexed GFF3 (.gff.gz + .tbi).This figure uses “NCBI RefSeq - RefSeq Curated”.
1. Track menu → Gene glyph → Representative transcript
Add the next track the same way. This one needs a BigBed file (.bb).This figure uses “ClinVar Variants - ClinVar SNVs”.
Type your region of interest into the location box and press Enter.This figure is at chr17:7,674,400-7,676,600.

Spec

This session spec draws the figure. It goes after &session=spec- on a JBrowse Web link that loads https://jbrowse.org/ucsc/hg38/config.json, which is what the Web button above opens.

{
  "views": [
    {
      "type": "LinearGenomeView",
      "assembly": "hg38",
      "loc": "chr17:7,674,400-7,676,600",
      "tracks": [
        {
          "trackId": "hg38-ncbiRefSeqCurated",
          "geneGlyphMode": "longestCoding",
          "height": 60
        },
        {
          "trackId": "hg38-clinvarMain",
          "height": 90
        }
      ]
    }
  ]
}

Notebook

The same view with jbrowse-anywidget, from the config the figure loads. Swap a track's uri for your own file.

from jbrowse_anywidget import JBrowseApp, fetch_hub

config = fetch_hub("https://jbrowse.org/ucsc/hg38/config.json")
app = JBrowseApp(
    assemblies=config["assemblies"],
    tracks=config.get("tracks", []),
    views=[
        {
            "type": "LinearGenomeView",
            "assembly": "hg38",
            "loc": "chr17:7,674,400-7,676,600",
            "tracks": [
                {
                    "trackId": "hg38-ncbiRefSeqCurated",
                    "geneGlyphMode": "longestCoding",
                    "height": 60
                },
                {
                    "trackId": "hg38-clinvarMain",
                    "height": 90
                }
            ]
        }
    ],
)
app  # display the widget

Image

npx @jbrowse/img --config https://jbrowse.org/ucsc/hg38/config.json \
  --assembly hg38 --loc chr17:7,674,400-7,676,600 \
  --track hg38-ncbiRefSeqCurated '{"geneGlyphMode":"longestCoding","height":60}' \
  --track hg38-clinvarMain '{"height":90}' \
  --width 1920 --out figure.svg

--out figure.png writes a PNG instead, through rsvg-convert (apt install librsvg2-bin, brew install librsvg).

Agent

cat > session.json <<'JSON'
{
  "views": [
    {
      "type": "LinearGenomeView",
      "assembly": "hg38",
      "loc": "chr17:7,674,400-7,676,600",
      "tracks": [
        {
          "trackId": "hg38-ncbiRefSeqCurated",
          "geneGlyphMode": "longestCoding",
          "height": 60
        },
        {
          "trackId": "hg38-clinvarMain",
          "height": 90
        }
      ]
    }
  ]
}
JSON

npx @jbrowse/capture --instance https://jbrowse.org/code/jb2/main/ \
  --config https://jbrowse.org/ucsc/hg38/config.json \
  --width 1920 --height 1060 \
  --spec session.json -o figure.png

Using JBrowse with AI agents covers the rest: hosted genomes to point it at, and why waiting for the render is the part that goes wrong.

The figures below take NLRP1, an inflammasome sensor whose domain architecture varies between mammals. Type NLRP1 into the location box, right-click the gene, choose Launch MSA view and press Submit.

The whole path on NLRP1: the right-click menu, the Launch MSA view dialog on its Orthologs tab, and the alignment Submit builds. In the alignment, the leftmost block is present in some rows and absent in others, the stack of blocks to its right runs down nearly all rows, and the whale rows have only the stack's right-hand end.

Reading NLRP1's conserved-domain overlay on the MSA

Each colored block is an NCBI conserved domain, drawn in alignment columns. The pyrin (PYD) domain sits at the N terminus of human NLRP1 and is absent from mouse Nlrp1a. NACHT, the winged helix, HD2, FIIND and CARD run across nearly every row and are the control; the whale rows have only the C-terminal end.

The domain calls come from NCBI's protein records. For a protein NCBI has no calls for:

react-msaview-cli interproscan scans the sequences into a domain file.
File → Annotations → Open annotation file... reads that file in.
File → Annotations → How to get a domain file... opens a walkthrough that also covers interpro, the instant path when the rows are UniProt accessions.

UniProt domains in genome coordinates for NLRP1

UCSC projects UniProt's annotations onto the genome, so the hosted config holds them as tracks. Turn on UniProt - Domains (under Genes and Gene Predictions) in the linear view you launched from, then narrow it to one record:

Filter by... in the track menu applies the row uniProtId is Q9C000, the gene's reviewed UniProt entry. Without it, the track draws a domain once per isoform, and isoforms sharing exons overlap.
UniProt - Chains, Mutations and AA Modifications project the rest of the record.

NLRP1 with NCBI RefSeq above UniProt - Domains, filtered to the gene's reviewed UniProt entry. Pyrin sits at the right-hand end, where the N terminus is, and NACHT, FIIND and CARD run leftward from it.

Adding the plugins to your own instance

The plugin store lists the two plugins as Protein3d and MSAView, and Installing plugins covers each way to install them.

The protein3d and msaview plugins add view types launched from a gene's right-click menu in JBrowse Web and Desktop. The single-view embedded components host only a linear genome view, so neither view type appears there. JBrowseR's JBrowseRApp takes both runtime plugins and a views list, while anywidget's JBrowseApp has no plugin loading yet.²

The approach is described in Proteins in the Genome Browser (Journal of Molecular Biology, 2026).

External links

Citations

Broz P, Dixit VM. Inflammasomes: mechanism of assembly, regulation and signalling. Nat Rev Immunol 2016.

Notes

The JBrowseMSA Gene Explorer builds a linked genome view, structure and MSA from a gene and a taxon in its URL, such as ?gene=TP53&taxon=9606. ↩
A ProteinView entry in a session-spec URL opens a connected view for demo links and embedded apps. The short form takes uniprotId, transcriptId and a connectedView with the assembly, loc and tracks to look the transcript up in; the plugin derives the AlphaFold structure and translates the transcript's CDS. The explicit form takes a structure url, feature and protein sequence, for a transcript no loaded track serves. A ProteinView with only a url opens as a standalone structure. The protein3d launching guide has both forms. ↩

Feedback on this tutorial is welcome: contact us.

Proteins on genomes.jbrowse.org

Prerequisites#

Where the data comes from#

Opening a gene in the protein browser#

Launching a structure#

Other views and structure sources in the Launch dialog#

Launching an MSA#

Reading NLRP1's conserved-domain overlay on the MSA#

UniProt domains in genome coordinates for NLRP1#

Adding the plugins to your own instance#

See also#

External links#

Citations#

Notes

Prerequisites

Where the data comes from

Opening a gene in the protein browser

Launching a structure

Other views and structure sources in the Launch dialog

Launching an MSA

Reading NLRP1's conserved-domain overlay on the MSA

UniProt domains in genome coordinates for NLRP1

Adding the plugins to your own instance

See also

External links

Citations