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BedAdapter

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file​

plugins/bed/src/BedAdapter/configSchema.ts

BedAdapter - Slots​

slot: bedLocation​

bedLocation: {
      type: 'fileLocation',
      defaultValue: { uri: '/path/to/my.bed.gz', locationType: 'UriLocation' },
    }

slot: columnNames​

columnNames: {
      type: 'stringArray',
      description: 'List of column names',
      defaultValue: [],
    }

slot: scoreColumn​

scoreColumn: {
      type: 'string',
      description: 'The column to use as a "score" attribute',
      defaultValue: '',
    }

slot: autoSql​

autoSql: {
      type: 'string',
      description: 'The autoSql definition for the data fields in the file',
      defaultValue: '',
    }

slot: colRef​

colRef: {
      type: 'number',
      description: 'The column to use as a "refName" attribute',
      defaultValue: 0,
    }

slot: colStart​

colStart: {
      type: 'number',
      description: 'The column to use as a "start" attribute',
      defaultValue: 1,
    }

slot: colEnd​

colEnd: {
      type: 'number',
      description: 'The column to use as a "end" attribute',
      defaultValue: 2,
    }