SyntenyCoord
Auto-generated from the config schema in the source — see the config guide for concepts. Built into JBrowse core. View source.
The coordinate system of the linear synteny and dotplot views, ggplot2's
coord_fixed: ratio: 1 holds every position axis at one bp per pixel,
the dotplot's x and y and each row of a synteny stack, so a longer genome
draws longer. Unset, each axis zooms on its own.
Example usage
{ type: 'DotplotView', coord: { ratio: 1 } }Config slots
Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.
| Slot | Description |
|---|---|
ratiomaybeNumber | 1 gives every position axis the same bp per pixel, and the slot accepts no other number; unset lets each zoom on its own |
Related links
- Docs: URL query parameter API