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SyntenyCoord

Auto-generated from the config schema in the source. See the config guide for concepts. Built into JBrowse core. View source.

The coordinate system of the linear synteny and dotplot views, ggplot2's coord_fixed: ratio: 1 holds every position axis at one bp per pixel, the dotplot's x and y and each row of a synteny stack, so a longer genome draws longer. Unset, each axis zooms independently.

Example usage

{ type: 'DotplotView', coord: { ratio: 1 } }

Config slots

Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.

Slot Description
ratio
maybeNumber		 1 gives every position axis the same bp per pixel, and the slot accepts no other number; unset lets each zoom independently