FeatureEncoding
Auto-generated from the config schema in the source. See the config guide for concepts. Built into JBrowse core. View source.
The feature displays' encoding, the channels the features paint
through.
Example usage
{ type: 'LinearBasicDisplay', encoding: { color: 'gene_biotype' } }Config slots
A setting written to it names members one by one: a member left out stays as it is, and null resets one. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.
| Slot | Description |
|---|---|
| color FeatureColor |
The main fill of each feature: { value }, a CSS color or a jexl expression, or a field and the scale its values map through, with a key. |
Related links
- Tutorial: ChromHMM chromatin states
- Tutorial: CNV cohort (TCGA)
- Tutorial: QTL mapping (BXD mice)
- Config guide: Customizing feature colors