CoverageEncoding

Auto-generated from the config schema in the source — see the config guide for concepts. Built into JBrowse core. View source.

The coverage band's encoding: y, its depth axis, a YChannel. scale.constant starts at 1, which makes symlog exactly log(depth+1) with the knee at one read. scale.fenceQuantile stays at 1, the deepest base in view; the Coverage axis panel's Clip extreme outliers writes 0.99, which stops the axis at twice the 99th percentile of the covered bins' peaks.

Example usage#

{
  type: 'LinearAlignmentsDisplay',
  coverage: { encoding: { y: { scale: { type: 'log' } } } },
}

Config slots#

A setting written to it names members one by one: a member left out stays as it is, and null resets one. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.