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MashMapAdapter

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file

plugins/comparative-adapters/src/MashMapAdapter/configSchema.ts

MashMapAdapter - Slots

slot: assemblyNames

assemblyNames: {
type: 'stringArray',
defaultValue: [],
description:
'Target is the first value in the array, query is the second',
}

slot: targetAssembly

targetAssembly: {
type: 'string',
defaultValue: '',
description: 'Alternative to assemblyNames array: the target assembly',
}

slot: queryAssembly

queryAssembly: {
type: 'string',
defaultValue: '',
description: 'Alternative to assemblyNames array: the query assembly',
}

slot: outLocation

outLocation: {
type: 'fileLocation',
defaultValue: {
uri: '/path/to/mashmap.out',
locationType: 'UriLocation',
},
}