Skip to main content

MashMapAdapter

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file​

plugins/comparative-adapters/src/MashMapAdapter/configSchema.ts

MashMapAdapter - Slots​

slot: assemblyNames​

assemblyNames: {
      type: 'stringArray',
      defaultValue: [],
      description:
        'Target is the first value in the array, query is the second',
    }

slot: targetAssembly​

targetAssembly: {
      type: 'string',
      defaultValue: '',
      description: 'Alternative to assemblyNames array: the target assembly',
    }

slot: queryAssembly​

queryAssembly: {
      type: 'string',
      defaultValue: '',
      description: 'Alternative to assemblyNames array: the query assembly',
    }

slot: outLocation​

outLocation: {
      type: 'fileLocation',
      defaultValue: {
        uri: '/path/to/mashmap.out',
        locationType: 'UriLocation',
      },
    }