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SNPCoverageRenderer

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file

plugins/alignments/src/SNPCoverageRenderer/configSchema.ts

SNPCoverageRenderer - Slots

slot: clipColor

clipColor: {
type: 'color',
description: 'the color of the clipping marker',
defaultValue: 'red',
}

slot: indicatorThreshold

indicatorThreshold: {
type: 'number',
description:
'the proportion of reads containing a insertion/clip indicator',
defaultValue: 0.4,
}

slot: drawArcs

drawArcs: {
type: 'boolean',
description: 'Draw sashimi-style arcs for intron features',
defaultValue: true,
}

slot: drawInterbaseCounts

drawInterbaseCounts: {
type: 'boolean',
description:
'draw count "upsidedown histogram" of the interbase events that don\'t contribute to the coverage count so are not drawn in the normal histogram',
defaultValue: true,
}

slot: drawIndicators

drawIndicators: {
type: 'boolean',
description:
'draw a triangular indicator where an event has been detected',
defaultValue: true,
}