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TwoBitAdapter

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file​

plugins/sequence/src/TwoBitAdapter/configSchema.ts

TwoBitAdapter - Slots​

slot: twoBitLocation​

twoBitLocation: {
      type: 'fileLocation',
      defaultValue: { uri: '/path/to/my.2bit', locationType: 'UriLocation' },
    }

slot: chromSizesLocation​

chromSizesLocation: {
      type: 'fileLocation',
      defaultValue: {
        uri: '/path/to/default.chrom.sizes',
        locationType: 'UriLocation',
      },
      description:
        'An optional chrom.sizes file can be supplied to speed up loading since parsing the twobit file can take time',
    }