BedpeAdapter

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file

plugins/bed/src/BedpeAdapter/configSchema.ts

intended for SVs in a single assembly

BedpeAdapter - Slots

slot: bedpeLocation

can be plaintext or gzipped, not indexed so loaded into memory on startup

bedpeLocation: {
      type: 'fileLocation',
      defaultValue: {
        uri: '/path/to/my.bedpe.gz',
        locationType: 'UriLocation',
      },
    }

slot: columnNames

columnNames: {
      type: 'stringArray',
      description: 'List of column names',
      defaultValue: [],
    }