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Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file


intended for SVs in a single assembly

BedpeAdapter - Slots

slot: bedpeLocation

can be plaintext or gzipped, not indexed so loaded into memory on startup

bedpeLocation: {
type: 'fileLocation',
defaultValue: {
uri: '/path/to/my.bedpe.gz',
locationType: 'UriLocation',

slot: columnNames

columnNames: {
type: 'stringArray',
description: 'List of column names',
defaultValue: [],