JBrowse 2 demos

These demos contain examples of new workflows and views in JBrowse 2, with links to live sessions on the web so you can try them out in the app yourself.

Note: everything demonstrated here on the web can also be done in JBrowse desktop.

Demo instances

• Human instance with HG002 insertion shown (many other tracks available too)
• SKBR3 breast cancer cell line - breakpoint split view translocation
• Human instance coloring methylation/modifications on nanopore reads
• Breakpoint split view demo (showing multi-hop split read connection)
• Grape vs Peach dotplot
• Yeast dotplot
• 1000 genomes extended trio demo
• Volvox sample data (small imaginary test datasets)
• ENCODE Multi-bigwig example
• COLO829 melanoma cancer cell line tumor vs normal multi-bigwig example
• Inversion example (“single row” breakpoint split view)
• Inversion example (linked reads mode)
• Multi-way synteny demo (grape vs peach vs cacao)
• Tetraploid potato multi-sample VCF rendering
• Human trio phased VCF rendering

Conference and other guided demos

• 2025 Biocuration workshop w/ Apollo 3 and intro slides
• 2025 PAG Workshop and intro slides
• 2024 PAG Workshop and intro slides
• 2023 ISMB/BOSC lightning talk
• 2023 PAG workshop
• 2023 publication figures (see our Genome Biology publication for more info)
• 2022 Plant and Animal Genomes (see also workshop video tutorial here)
• 2021 Biology of Genomes
• 2020 Cancer SVs demo - guided demo of structural variant visualization
• 2020 ASHG
• 2020 ITCR
• 2020 Biology of Genomes