JBrowse 2

A pluggable open-source platform for visualizing and integrating biological data.

Includes a full-featured web application, embeddable components for developers, and soon a desktop application.

Web

Embedded

Linear genome view React component on npm also see storybook docs
JBrowseR R package on CRAN
More embeddable products coming soon

Desktop

Coming soon

Features

Linear, circular, dotplot, and synteny views for improved structural variant and comparative genomics visualization
Support for many common data types including BAM, CRAM, tabix indexed VCF, GFF, BED, BigBed, BigWig, and several specialized formats
Plugin ecosystem which can add additional view types, track types, data adapters, and more, for nearly endless extensibility
And more!

See a summary of features and comparison to JBrowse 1 here

Citation

Research citations are one of the main metrics the JBrowse project uses to demonstrate our relevance and utility when applying for funding to continue our work. If you use JBrowse in research that you publish, please cite the most recent JBrowse paper

Buels, Robert, et al. "JBrowse: a dynamic web platform for genome visualization and analysis." Genome Biology 17.1 (2016): 66.

License

JBrowse is released under the Apache License, Version 2.0

Funding and Collaboration

JBrowse development is supported by the US National Institutes of Health, The Chan Zuckerberg Initiative, The Ontario Institute for Cancer Research, and University of California, Berkeley.