LinearVariantDisplay

Auto-generated config schema for the current JBrowse release — see the config guide for concepts. Provided by the variants plugin. View source.

Example usage#

Minimal VariantTrack config. See the variant track guide for all options:

{
  type: 'VariantTrack',
  trackId: 'variants',
  name: 'Variants',
  assemblyNames: ['hg38'],
  adapter: {
    type: 'VcfTabixAdapter',
    uri: 'https://example.com/variants.vcf.gz',
  },
}

Taller track. The displayDefaults object shorthand is equivalent to displays: [{ type: 'LinearVariantDisplay', displayId: '...', ... }] — see configuring displays:

{
  type: 'VariantTrack',
  trackId: 'variants',
  name: 'Variants',
  assemblyNames: ['hg38'],
  adapter: {
    type: 'VcfTabixAdapter',
    uri: 'https://example.com/variants.vcf.gz',
  },
  displayDefaults: { height: 200 },
}

See the Config slots section below for all available configuration fields.

Extends LinearCanvasBaseDisplay for GPU-accelerated variant rendering.

Related links#

• Adapter: BedpeAdapter
• Adapter: SplitVcfTabixAdapter
• Adapter: StarFusionAdapter
• Adapter: VcfAdapter
• Adapter: VcfTabixAdapter
• State model: runtime API
• Base config: LinearCanvasBaseDisplay
• Guide: Custom track and display types
• Guide: Tracks

Config slots#

These slots go on a display entry: "displays": [{ "type": "LinearVariantDisplay", ... }], or in the track's displayDefaults when this is its default display. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.

'jexl:get(feature,'note') || get(feature,'description') || get(feature,'function')'

'jexl:get(feature,'_mouseOver')||get(feature,'name')||get(feature,'function')||get(feature,'id')'