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VcfTabixAdapter

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file

plugins/variants/src/VcfTabixAdapter/configSchema.ts

VcfTabixAdapter - Slots

slot: vcfGzLocation

vcfGzLocation: {
type: 'fileLocation',
defaultValue: { uri: '/path/to/my.vcf.gz', locationType: 'UriLocation' },
}

slot: index.indexType

indexType: {
model: types.enumeration('IndexType', ['TBI', 'CSI']),
type: 'stringEnum',
defaultValue: 'TBI',
}

slot: index.location

location: {
type: 'fileLocation',
defaultValue: {
uri: '/path/to/my.vcf.gz.tbi',
locationType: 'UriLocation',
},
}