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BgzipFastaAdapter

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file​

plugins/sequence/src/BgzipFastaAdapter/configSchema.ts

BgzipFastaAdapter - Slots​

slot: fastaLocation​

fastaLocation: {
      type: 'fileLocation',
      defaultValue: { uri: '/path/to/seq.fa.gz', locationType: 'UriLocation' },
    }

slot: faiLocation​

faiLocation: {
      type: 'fileLocation',
      defaultValue: {
        uri: '/path/to/seq.fa.gz.fai',
        locationType: 'UriLocation',
      },
    }

slot: metadataLocation​

metadataLocation: {
      description: 'Optional metadata file',
      type: 'fileLocation',
      defaultValue: {
        uri: '/path/to/fa.metadata.yaml',
        locationType: 'UriLocation',
      },
    }

slot: gziLocation​

gziLocation: {
      type: 'fileLocation',
      defaultValue: {
        uri: '/path/to/seq.fa.gz.gzi',
        locationType: 'UriLocation',
      },
    }