Skip to main content

LinearPileupDisplay

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file​

plugins/alignments/src/LinearPileupDisplay/configSchema.ts

LinearPileupDisplay - Slots​

slot: defaultRendering​

defaultRendering: {
        type: 'stringEnum',
        model: types.enumeration('Rendering', ['pileup']),
        defaultValue: 'pileup',
      }

slot: renderers​

renderers: ConfigurationSchema('RenderersConfiguration', {
  PileupRenderer: pluginManager.getRendererType('PileupRenderer').configSchema,
})

slot: maxFeatureScreenDensity​

maxFeatureScreenDensity: {
        type: 'number',
        description: 'maximum features per pixel that is displayed in the view',
        defaultValue: 5,
      }

slot: colorScheme​

colorScheme: {
        type: 'stringEnum',
        model: types.enumeration('colorScheme', [
          'strand',
          'normal',
          'insertSize',
          'insertSizeAndOrientation',
          'mappingQuality',
          'tag',
        ]),
        description: 'color scheme to use',
        defaultValue: 'normal',
      }

LinearPileupDisplay - Derives from​

baseConfiguration: linearBasicDisplayConfigSchemaFactory(pluginManager)