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LinearPileupDisplay

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file

plugins/alignments/src/LinearPileupDisplay/configSchema.ts

LinearPileupDisplay - Slots

slot: defaultRendering

defaultRendering: {
type: 'stringEnum',
model: types.enumeration('Rendering', ['pileup']),
defaultValue: 'pileup',
}

slot: renderers

renderers: ConfigurationSchema('RenderersConfiguration', {
PileupRenderer:
pluginManager.getRendererType('PileupRenderer')!.configSchema,
})

slot: maxFeatureScreenDensity

maxFeatureScreenDensity: {
type: 'number',
description: 'maximum features per pixel that is displayed in the view',
defaultValue: 5,
}

slot: colorScheme

colorScheme: {
type: 'stringEnum',
model: types.enumeration('colorScheme', [
'strand',
'normal',
'insertSize',
'insertSizeAndOrientation',
'mappingQuality',
'tag',
]),
description: 'color scheme to use',
defaultValue: 'normal',
}

LinearPileupDisplay - Derives from

baseConfiguration: linearBasicDisplayConfigSchemaFactory(pluginManager)