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LinearReadArcsDisplay

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file​

plugins/alignments/src/LinearReadArcsDisplay/configSchema.ts

LinearReadArcsDisplay - Slots​

slot: maxFeatureScreenDensity​

maxFeatureScreenDensity: {
        type: 'number',
        description: 'maximum features per pixel that is displayed in the view',
        defaultValue: 5,
      }

slot: lineWidth​

lineWidth: {
        type: 'number',
        description: 'set arc line width',
        defaultValue: 1,
      }

slot: jitter​

jitter: {
        type: 'number',
        description:
          'jitters the x position so e.g. if many reads map to exact same x position, jittering makes it easy to see that there are many of them',
        defaultValue: 0,
      }

slot: colorScheme​

colorScheme: {
        type: 'stringEnum',
        model: types.enumeration('colorScheme', [
          'strand',
          'normal',
          'insertSize',
          'insertSizeAndOrientation',
          'mappingQuality',
          'tag',
        ]),
        description: 'color scheme to use',
        defaultValue: 'normal',
      }

LinearReadArcsDisplay - Derives from​

baseConfiguration: linearBasicDisplayConfigSchemaFactory(pluginManager)