JBrowse1Connection

Auto-generated config schema for the current JBrowse release — see the config guide for concepts. Provided by the legacy-jbrowse plugin. View source.

Example usage#

An entry in the config's connections, pointing at a JBrowse 1 data directory — the one holding trackList.json and seq/. Its tracks are translated to JBrowse 2 equivalents on connect, which is the path for serving an existing JBrowse 1 instance's data without re-processing it.

{
  type: 'JBrowse1Connection',
  connectionId: 'jbrowse1_example',
  name: 'Legacy JBrowse 1 data',
  assemblyNames: ['hg19'],
  dataDirLocation: { uri: 'https://example.com/jbrowse1/data/' },
}

See the Config slots section below for all available configuration fields.

Related links#

• State model: runtime API
• Base config: BaseConnection
• Config guide: Connections
• User guide: Connections

Config slots#

These slots are top-level fields of the connection's entry in connections. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.

{ uri: 'https://mysite.com/jbrowse/data/', locationType: 'UriLocation' }