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BedTabixAdapter

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file​

plugins/bed/src/BedTabixAdapter/configSchema.ts

BedTabixAdapter - Slots​

slot: bedGzLocation​

bedGzLocation: {
      type: 'fileLocation',
      defaultValue: { uri: '/path/to/my.bed.gz', locationType: 'UriLocation' },
    }

slot: index.indexType​

indexType: {
        model: types.enumeration('IndexType', ['TBI', 'CSI']),
        type: 'stringEnum',
        defaultValue: 'TBI',
      }

slot: index.location​

location: {
        type: 'fileLocation',
        defaultValue: {
          uri: '/path/to/my.bed.gz.tbi',
          locationType: 'UriLocation',
        },
      }

slot: columnNames​

columnNames: {
      type: 'stringArray',
      description: 'List of column names',
      defaultValue: [],
    }

slot: scoreColumn​

scoreColumn: {
      type: 'string',
      description: 'The column to use as a "score" attribute',
      defaultValue: '',
    }

slot: autoSql​

autoSql: {
      type: 'string',
      description: 'The autoSql definition for the data fields in the file',
      defaultValue: '',
    }