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Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file


BedTabixAdapter - Slots

slot: bedGzLocation

bedGzLocation: {
type: 'fileLocation',
defaultValue: { uri: '/path/to/my.bed.gz', locationType: 'UriLocation' },

slot: index.indexType

indexType: {
model: types.enumeration('IndexType', ['TBI', 'CSI']),
type: 'stringEnum',
defaultValue: 'TBI',

slot: index.location

location: {
type: 'fileLocation',
defaultValue: {
uri: '/path/to/my.bed.gz.tbi',
locationType: 'UriLocation',

slot: columnNames

columnNames: {
type: 'stringArray',
description: 'List of column names',
defaultValue: [],

slot: scoreColumn

scoreColumn: {
type: 'string',
description: 'The column to use as a "score" attribute',
defaultValue: '',

slot: autoSql

autoSql: {
type: 'string',
description: 'The autoSql definition for the data fields in the file',
defaultValue: '',