PileupSoftClips

Auto-generated from the config schema in the source — see the config guide for concepts. Provided by the alignments plugin. View source.

The pileup's softClips layer: the bases at each end of a read the aligner soft-clipped, drawn past the aligned span.

Example usage#

{ type: 'LinearAlignmentsDisplay', pileup: { softClips: { show: true } } }

Config slots#

A setting written to it names members one by one: a member left out stays as it is, and null resets one. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.