RowTree

Auto-generated from the config schema in the source — see the config guide for concepts. Built into JBrowse core. View source.

rows.tree, the dendrogram beside the rows: its newick, and where a clustering run computed it, the locus and settings it ran with. A string is the newick. The provenance is keyed by the newick, as rows.sort is by rows.field: a write of another newick, as a member or whole, emptying it or filling it included, drops the provenance it does not state, so a provenance only ever describes the tree beside it. A plot read gives the object whichever form was written. Whether it draws is rows.axis.tree.

Example usage#

{ type: 'LinearVariantDisplay', rows: { tree: '((HG002,HG003),HG004);' } }

Config slots#

A setting written to it names members one by one: a member left out stays as it is, and null resets one. One that changes newick, emptying or filling it included, first clears provenance, which name the old values, except those it states. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.