MarkLocus

Auto-generated from the config schema in the source — see the config guide for concepts. Provided by the marks plugin. View source.

A mark's far end as a position that may lie on another sequence: pos, the feature field holding its coordinate, and refName, the field holding the sequence it lies on, as a paired record states its mate. A field name written directly on the encoding sets pos, on the feature's sequence. Left unwritten behind a mate step, it is the other end the step found.

Example usage#

A BEDPE-like file whose second end sits in separate columns:

{
  mark: 'link',
  encoding: { x2: { refName: 'chrom2', pos: 'start2' } },
}

Config slots#

A setting written to it replaces it whole: a member left out returns to its default. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.