LaneRows

Auto-generated from the config schema in the source — see the config guide for concepts. Provided by the linear-comparative-view plugin. View source.

Example usage#

{
  type: 'MultiWaySyntenyDisplay',
  rows: { domain: ['GCF_000346465.2', 'poplar'], kept: ['GCF_000346465.2', 'poplar', 'citrus'] },
}

See the Config slots section below for all available configuration fields.

The multi-way synteny display's rows: one lane per assembly below the anchor, so assembly is the one field, and the object is the arrangement a reader gives the lanes, written whole as every display's rows is. domain lists the lanes that stack first, in order, the rest following densest-first so a ribbon chain through adjacent lanes is cut as late as possible; kept names the lanes drawn, empty drawing the track's lanes or every lane.

Config slots#

Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.