LaneRows

Auto-generated from the config schema in the source — see the config guide for concepts. Provided by the linear-comparative-view plugin. View source.

The multi-way synteny display's rows: one lane per assembly below the anchor, so assembly is the one field, and the object is the arrangement a reader gives the lanes, written whole as every display's rows is. sort lists the lanes that stack first, in order, the rest following densest-first so a ribbon chain through adjacent lanes is cut as late as possible; kept names the lanes drawn, empty drawing the track's lanes or every lane. Haplotype lanes read off a graph follow by structure instead, below any lanes sort pins, so lanes whose deletions and insertions against the anchor match sit together, in an order worked out once per window.

Example usage#

{
  type: 'MultiWaySyntenyDisplay',
  rows: { sort: ['GCF_000346465.2', 'poplar'], kept: ['GCF_000346465.2', 'poplar', 'citrus'] },
}

Config slots#

A setting written to it replaces it whole, since its members are alternatives: a member left out returns to its default. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.