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Sashimi

Auto-generated from the config schema in the source — see the config guide for concepts. Provided by the alignments plugin. View source.

The alignments display's sashimi setting: the splice-junction arcs, over the coverage band or in a strip below it, and in that strip alone while coverage.show is off. Which junctions draw is the display's filter.junctions.

Example usage

{
  type: 'LinearAlignmentsDisplay',
  sashimi: { placement: 'auto', showCounts: true },
  filter: { junctions: { minReads: 5, nonCanonical: 'exclude' } },
}

Config slots

A setting written to it names members one by one: a member left out stays as it is, and null resets one. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.

SlotDescription
show
boolean = true		draw the sashimi arcs
height
number = 40		height of the strip below coverage that down arcs draw in, in pixels
placement
stringEnum (up, down, auto) = 'up'		where the arcs draw: up over the coverage histogram, down in a strip below it, or auto, which sends a junction down where it would cross another. Without the coverage band every arc draws down
showCounts
boolean = false		draw the supporting-read count on each arc