comparative-adapters
Auto-generated from exported functions tagged #api in the source. See
imports and re-exports for how to
import these from a plugin.
contigTables
Each side of a pairwise file as tables: query and target, each its
assembly name and its contigs in the order the file first names them, with
the length the file states (null where the adapter cannot tell, such as
an MCScan anchors file, which lists genes rather than contigs). A host lays
a whole-genome axis out of them, as the dotplot import does from an
assembly.
// type signature
(pluginManager: PluginManager, { adapterConfig }: ContigTablesArgs) => Promise<{ query: { assemblyName: string; refName: string[]; length: (number | null)[]; }; target: { assemblyName: string; refName: string[]; length: (number | null)[]; }; }>