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VariantFeatureWidget

Auto-generated @jbrowse/mobx-state-tree API for the current JBrowse release — see pluggable elements for concepts. Provided by the variants plugin. View source.

Feature-details widget for a VCF variant, extending the base feature widget with variant-specific fields such as genotypes and INFO.

Members a composed model contributes are listed here too, so these tables are the whole surface.

Properties

MemberDescriptionDefined by
type
type: types.literal('VariantFeatureWidget')		VariantFeatureWidget
descriptions
descriptions: types.frozen<Descriptions | undefined>()		VariantFeatureWidget
id
id: ElementId		BaseFeatureWidget
unformattedFeatureData
unformattedFeatureData: types.optional(
        types.frozen<MaybeSerializedFeat>(),
        undefined,
      )
the feature as the click handed it over, before any callback ran. Persisted as featureDataBaseFeatureWidget
view
view: types.safeReference(
        pluginManager.pluggableMstType('view', 'stateModel'),
      )
BaseFeatureWidget
track
track: types.safeReference(
        pluginManager.pluggableMstType('track', 'stateModel'),
      )
BaseFeatureWidget
trackId
trackId: types.maybe(types.string)		BaseFeatureWidget
trackType
trackType: types.maybe(types.string)		BaseFeatureWidget
sequenceFeatureDetails
sequenceFeatureDetails: types.optional(SequenceFeatureDetailsF(), {})
BaseFeatureWidget
parentFeature
parentFeature: types.optional(
        types.frozen<ParentFeatureSummary | undefined>(),
        undefined,
      )
names the feature this one was reached through, when it was reached through one -- a transcript clicked inside its geneBaseFeatureWidget

Volatiles

MemberDescriptionDefined by
sequenceHoverPosition
sequenceHoverPosition: undefined		genomic base currently hovered in this widget's sequence panel, read by the LGV crosshair overlayBaseFeatureWidget

Getters

MemberDescriptionDefined by
trackConfiguration
AnyConfigurationModel | undefined		the config the track tier of formatDetails reads. The open track's own while it is open; after it is closed, the session's copy of the same config, which is why the widget records trackIdBaseFeatureWidget
formatDetailsTiers
FormatDetailsTiers		BaseFeatureWidget
formatted
{ feature?: SimpleFeatureSerialized | undefined; error?: Error | undefined; }
BaseFeatureWidget
maxDepth
number | undefined		levels of subfeature card the panel renders; unset means no limitBaseFeatureWidget
featureData
SimpleFeatureSerialized | undefined		the feature with every formatDetails callback appliedBaseFeatureWidget
error
Error | undefined		BaseFeatureWidget

Actions

MemberDescriptionDefined by
setSequenceHoverPosition
(pos: SequenceHoverPosition | undefined) => void		BaseFeatureWidget
setFeatureData
(featureData: SimpleFeatureSerialized) => void		BaseFeatureWidget
clearFeatureData
() => void		BaseFeatureWidget