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WiggleRows

Auto-generated from the config schema in the source — see the config guide for concepts. Provided by the wiggle plugin. View source.

The rows of a LinearWiggleDisplay on a MultiQuantitativeTrack: a QuantitativeRows whose field defaults to source, so each subtrack draws its own row.

Example usage

{ type: 'LinearWiggleDisplay', rows: { field: '' } }

Config slots

Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.

SlotDescription
field
stringEnum ("", source) = 'source'		source for one row per subtrack, or empty for one plot every source shares. Empty stays a value rather than unset, since under this default unset could not say "one plot every source shares".
Inherited from QuantitativeRows1 slot
filter
RowPredicate		The rows shown by attribute: a list of RowPredicate entries over a subtrack's field, such as group, each one a row must pass, as [{ field: 'group', equal: 'tumor' }]. A row missing the attribute fails every test but valid: false. It narrows the rows before kept, and a write changing field keeps it, since it names no row by its value; a row's name goes in kept.
Inherited from Rows3 slots
axis
RowAxisWithGrid		The guide down the left of the rows, a RowAxisWithGrid: whether the tree and the row names draw, the sidebar's width, and a line between rows. What it draws is rows.tree and rows.labels.
colors
stringMap = {}		A color pinned on a row, by name, over whatever rows.color maps it to, as labels pins its text: ggplot2's scale_*_manual(values = c(name = ...)). The arrangement dialog's row swatches write it. A row with none takes rows.color, else the file's own color (MAF's samples[].color, a listed source's color), else the palette where the rows share one panel.
color
RowColor		The rows colored by an attribute: a RowColor channel from a row field through a scale, name (each row) by default. Per-row colors are rows.colors, which win over it.
Inherited from RowArrangement4 slots
sort
stringArray = []		The row order, as Vega-Lite's sort lists it: the rows listed lead, in this order, and none is dropped. The rest keep the order their source lists them in (a VCF's samples, a multi-BigWig's subtracks), or sort, digits by magnitude, where the rows are values found on features. A clustering run, the arrangement dialog and "Sort rows here" all write it, and a run rotates its dendrogram towards it rather than discarding it.
labels
stringMap = {}		A label drawn beside a row in place of its name, by name. Whether any label draws is rows.axis.labels.
tree
RowTree		The dendrogram beside the rows, a RowTree: newick, or { newick, provenance } where a clustering run wrote it beside the order it produced. A reorder that moves a row drops it. Whether it draws is rows.axis.tree. The rows follow the tree's leaves, then rows.sort for any rows the tree lacks; a supplied tree rotates towards rows.sort, so a sort also decides which way each clade faces.
kept
stringArray = []		The rows shown, by name: a clade picked off the tree, or the rows one key row stands for. It narrows the rows to those it names, after filter where the display declares one; empty shows every row, and a list naming no current row shows none, with a notice. Keyed: a write changing field clears it.