NormalInsertSize

Auto-generated from the config schema in the source — see the config guide for concepts. Provided by the alignments plugin. View source.

The alignments display's normalInsertSize setting: the insert sizes a proper pair counts as normal, which every reader of insertSizeAndOrientation classifies by, the read fills, the connections and the hover. Both ends pin the band together; unset, each region's band is sampled from its own pairs. The key names the band in bp wherever every region in view classifies by one, and the hover names the bound a pair crosses. Recoloring a level is encoding.color's.

Example usage#

{
  type: 'LinearAlignmentsDisplay',
  normalInsertSize: { min: 150, max: 600 },
  encoding: {
    color: {
      field: 'insertSizeAndOrientation',
      scale: { domain: ['long', 'RL'], range: ['#d62728', '#17becf'] },
    },
  },
}

Config slots#

A setting written to it names members one by one: a member left out stays as it is, and null resets one. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.