AlignmentsEncoding
Auto-generated from the config schema in the source. See the config guide for concepts. Provided by the alignments plugin. View source.
The alignments displays' encoding, the channels the reads paint through.
Example usage
{ type: 'LinearAlignmentsDisplay', encoding: { color: 'tags.HP' } }Config slots
A setting written to it names members one by one: a member left out stays as it is, and null resets one. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.
| Slot | Description |
|---|---|
| color AlignmentsColor |
The read fill: { value: "steelblue" } paints every read, "strand" a read dimension's own vocabulary and "tags.HP" a SAM tag. |
Related links
- Config guide: Alignments track