CoverageBand
Auto-generated from the config schema in the source — see the config guide for concepts. Built into JBrowse core. View source.
The coverage histogram band of the alignments and MAF displays, their
coverage setting: whether it draws, its height, the insertion and clip
marks drawn in it (interbase), which allele segments it colors
(alleles), and its depth axis, encoding.y. On the alignments display,
the modification bars in it follow the pileup's bases layer, which
draws them beside its cells from the same calls.
Example usage
{ type: 'LinearAlignmentsDisplay', coverage: { height: 80 } }{ type: 'LinearAlignmentsDisplay', coverage: { show: false } }Related links
- Extended by: LGVSyntenyCoverage
Config slots
A setting written to it names members one by one: a member left out stays as it is, and null resets one. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.
| Slot | Description |
|---|---|
showboolean = true | draw the coverage band |
heightnumber = 45 | height of the coverage band in pixels |
| encoding CoverageEncoding | The depth axis, encoding.y: its scale, axis and rules. |
| interbase CoverageInterbase | The insertion and clip marks between bases: show, and the filter deciding which positions get an indicator triangle. |
| alleles CoverageAlleles | The colored allele segments: show, and the filter on each one's fraction. |