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CoverageInterbase

Auto-generated from the config schema in the source — see the config guide for concepts. Built into JBrowse core. View source.

The coverage band's interbase layer: the insertion and clip count bars and their indicator triangles, drawn between the bases they sit between. Its filter picks the positions that earn a triangle.

Example usage

{ type: 'LinearAlignmentsDisplay', coverage: { interbase: { show: false } } }
{
  type: 'LinearAlignmentsDisplay',
  coverage: { interbase: { filter: [{ field: 'fraction', gt: 0.1 }] } },
}

Config slots

A setting written to it names members one by one: a member left out stays as it is, and null resets one. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.

SlotDescription
show
boolean = true		draw the insertion and clip count bars and their indicator triangles
filter
FieldPredicate		Which positions get an indicator triangle, by depth, the reads covering the position, and fraction, its insertions and clips as a share of that depth, each a floor written gte or gt. Unwritten, a field keeps its default, depth at least 8 and fraction above 0.3; an entry naming a field with no test, { field: 'depth' }, drops that field's default.