ReadConnectionsOrdinaryPairs

Auto-generated from the config schema in the source. See the config guide for concepts. Provided by the alignments plugin. View source.

The read connections' ordinaryPairs layer: the pairs that carry no category, drawn as context beside the ones that do: an LR pair inside the insert-size band, which insertSizeAndOrientation calls normal and normalInsertSize pins.

Example usage#

{
  type: 'LinearAlignmentsDisplay',
  readConnections: { show: true, ordinaryPairs: { show: false } },
}

Config slots#

A setting written to it names members one by one: a member left out stays as it is, and null resets one. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.