MarkColor

Auto-generated config schema for the current JBrowse release — see the config guide for concepts. Provided by the marks plugin. View source.

Example usage#

{ shape: 'bar', encoding: { y: 'score', color: 'steelblue' } }

{
  shape: 'point',
  encoding: { y: 'score', color: { field: 'strand', domain: ['1', '-1'] } },
}

{
  shape: 'span',
  encoding: {
    color: {
      field: 'score',
      scale: 'log',
      domainMin: 1,
      domainMax: 1000,
      range: ['white', 'red'],
    },
  },
}

{
  shape: 'bar',
  encoding: {
    y: 'score',
    color: {
      field: 'score',
      scale: 'linear',
      domainMin: -2,
      domainMax: 6,
      domainMid: 0,
      range: ['blue', 'white', 'red'],
    },
  },
}

{
  shape: 'point',
  encoding: {
    y: 'score',
    color: {
      field: 'pip',
      scale: 'threshold',
      domain: [0.1, 0.5],
      range: ['#357ebd', '#eea236', '#d43f3a'],
    },
  },
}

See the Config slots section below for all available configuration fields.

A mark's encoding.color: one CSS colour or jexl: callback for every instance, or a field through a categorical scale (a range colour per value), a linear or log scale (a ramp between domainMin and domainMax, domainMid placing its middle stop where a diverging ramp turns) or a threshold scale (a range colour per interval between the cut points domain lists). A string is the constant; the object binds the field, and a scale is what the legend describes.

Config slots#

These slots go on a display entry: "displays": [{ "type": "MarkColor", ... }], or in the track's displayDefaults when this is its default display. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.