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SyntenyData

Auto-generated from the config schema in the source — see the config guide for concepts. Built into JBrowse core. View source.

What a comparative fetch reads of a tiered file (a PIF built with a coarse tier), on the linear synteny, dotplot and circular views and the LGVSynteny and multi-way displays: resolution is the stored tier.

Example usage

{ type: 'LinearSyntenyView', data: { resolution: 'coarse' } }

Config slots

A setting written to it names members one by one: a member left out stays as it is, and null resets one. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.

SlotDescription
resolution
stringEnum (auto, fine, coarse) = 'auto'		the stored tier to fetch: 'auto' switches at the adapter's bpPerPx threshold, 'fine' pins the per-row CIGAR tier, 'coarse' the tier whose CIGAR is folded to its large indels