PileupMark
Auto-generated from the config schema in the source — see the config guide for concepts. Provided by the alignments plugin. View source.
The pileup's mark, the bar each read draws as: its height.
Example usage
{ type: 'LinearAlignmentsDisplay', pileup: { mark: { height: 3 } } }Config slots
A setting written to it names members one by one: a member left out stays as it is, and null resets one. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.
| Slot | Description |
|---|---|
heightnumber = 7 | The one compactness setting: the spacing between reads follows from it (featureSpacingForHeight), and the Normal, Compact and Super-compact presets (7, 3, 1) and the fit-mode squeeze all write or read it. |