RowAnnotation

Auto-generated from the config schema in the source. See the config guide for concepts. Built into JBrowse core. View source.

One entry of rows.annotations: a color column beside the row labels, the row attribute field through a categorical scale as rows.color deals one, with a key of its own titled legend.title. A string is the field. An entry naming no field, or name, which the label already shows, is refused.

Example usage#

{ type: 'LinearVariantDisplay', rows: { annotations: ['population', 'sex'] } }

{
  type: 'LinearVariantDisplay',
  rows: {
    annotations: [
      {
        field: 'sex',
        scale: { domain: ['female', 'male'], range: ['#d95f02', '#1b9e77'] },
        legend: { title: 'Sex (reported)' },
      },
    ],
  },
}

Config slots#

Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.

"the CSS color each value in domain takes, in the same order; past them, the column's palette"

'a color: every row the scale leaves out takes it. Unset: each value deals the next color of the column's palette; "" leaves the rows domain does not list without a color'