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ReadConnectionsEncoding

Auto-generated from the config schema in the source — see the config guide for concepts. Provided by the alignments plugin. View source.

The read connections' encoding: the color and width each connection strokes at.

Example usage

{
  type: 'LinearAlignmentsDisplay',
  readConnections: {
    show: true,
    encoding: { color: 'insertSize', strokeWidth: 2 },
  },
}

Config slots

A setting written to it names members one by one: a member left out stays as it is, and null resets one. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.

SlotDescription
color
AlignmentsArcColor		The field that colors every connection: this band, pileup.connectors and a chain's links between displayed regions; "" uses the reads' encoding.color field where a connection paints it.
strokeWidth
ReadConnectionsStrokeWidth		The width each connection strokes at.