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SyntenyMark

Auto-generated from the config schema in the source — see the config guide for concepts. Built into JBrowse core. View source.

The linear synteny view's mark: how each ribbon draws between its two rows. Straight sides read a ribbon's slant as the offset between the rows; the bump curve reads a dense whole-genome stack more calmly.

Example usage

{ type: 'LinearSyntenyView', mark: { interpolate: 'bump' } }

Config slots

Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.

SlotDescription
interpolate
stringEnum (linear, bump) = 'linear'		the curve of each ribbon side: linear is straight, bump the S-curve that leaves and meets each row square