AlignmentsArcColor

Auto-generated from the config schema in the source — see the config guide for concepts. Provided by the alignments plugin. View source.

Example usage#

{ type: 'LinearAlignmentsDisplay', readConnections: 'arc', arcColor: 'pairOrientation' }

{
  type: 'LinearAlignmentsDisplay',
  readConnections: 'cloud',
  color: { field: 'insertSize' },
}

The alignments displays' arcColor setting colors the read-connection arcs and the read cloud. Empty, the default, the arcs take the reads' color field where it is one an arc paints (insertSize, pairOrientation, insertSizeAndOrientation), and paint insertSizeAndOrientation under any other. A field of its own colors the arcs whatever the reads show. A string is the field.

Config slots#

Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.