Spreadsheet view
TL;DR: The spreadsheet view loads a tabular file as an interactive table (one row per feature) that you can sort, filter, and jump from into a genome view. It backs the SV inspector but works on its own for any tabular genomic data.
Opening a spreadsheet view
- Launch Spreadsheet view from the Add menu in the main menu bar
- In the import form, pick an assembly and supply a file (URL or local)
Supported formats (the type is detected from the extension):
- CSV, TSV
- VCF or VCF.gz
- BED, BED.gz
- BEDPE, BEDPE.gz
- STAR-Fusion output
Working with the table
- Click a column header to sort; use the column and text filters to narrow rows
- Each row has a feature menu (triangle dropdown) that can:
- Open in linear genome view - navigate an LGV to that feature
- Open in breakpoint split view - for paired/breakend rows, open the two breakpoints stacked
For long-range structural variants specifically, the SV inspector pairs this table with a whole-genome circular overview and cross-filters the two together.