LinearGCContentTrackDisplay

Auto-generated config schema for the current JBrowse release — see the config guide for concepts. Provided by the gccontent plugin. View source.

Example usage#

GC-skew mode with a small, overlapping sliding window (a windowDelta under windowSize overlaps the windows, which smooths the signal):

{
  type: 'GCContentTrack',
  trackId: 'gc',
  name: 'GC content',
  assemblyNames: ['hg38'],
  adapter: { type: 'GCContentAdapter' },
  displayDefaults: { gcMode: 'skew', windowSize: 50, windowDelta: 10 },
}

See the Config slots section below for all available configuration fields.

GC content as its own track: the display of a GCContentTrack, whose GCContentAdapter wraps a sequence adapter. Use LinearGCContentDisplay instead to hang GC off an existing ReferenceSequenceTrack without configuring a second adapter.

Every slot comes from the shared base below; this display adds none of its own.

Related links#

• State model: runtime API
• Base config: SharedGCContentDisplay
• Guide: Custom track and display types
• Guide: Defaults for all tracks
• Guide: Tracks

Config slots#

These slots go on a display entry: "displays": [{ "type": "LinearGCContentTrackDisplay", ... }], or in the track's displayDefaults when this is its default display. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.

{
  "type": "LinearWiggleDisplay",
  "defaultRendering": "density"
}