UcscResultsWidget

Auto-generated @jbrowse/mobx-state-tree API for the current JBrowse release — see pluggable elements for concepts. Provided by the blat plugin. View source.

The hit table for one UCSC BLAT or in-silico PCR query. The features are the same ones the result track was built from, so the list and the track can't disagree.

Properties

Member	Description
id `id: types.identifier`
type `type: types.literal('UcscResultsWidget')`
features `features: types.frozen<SimpleFeatureSerialized[]>([])`	hits, best first (BLAT sorts by score; hgPcr returns products in order)
assembly `assembly: types.string`	assembly the hits are on, for navigating and for the header line
trackName `trackName: types.string`	name of the on-the-fly track these hits were added as
resultNoun `resultNoun: types.optional(types.enumeration(['hit', 'product']), 'hit')`	what one result is called. A BLAT result is a hit; an hgPcr result is a product, which is a band on a gel — the word a bench scientist reasons in, and "2 hits" understates what two of them mean for a PCR run

UcscResultsWidget

Properties#

Properties