UCSCTrackHubConnection

Auto-generated config schema for the current JBrowse release — see the config guide for concepts. Provided by the data-management plugin. View source.

Example usage#

An entry in the config's connections. The hub's hub.txt is read on connect and every track it declares for a matching assembly is added to the session — nothing is written into your config, so the hub stays the source of truth. assemblyNames limits which of the hub's genomes are used.

{
  type: 'UCSCTrackHubConnection',
  connectionId: 'ucsc_hub_example',
  name: 'My track hub',
  assemblyNames: ['hg38'],
  hubTxtLocation: { uri: 'https://example.com/hub.txt' },
}

See the Config slots section below for all available configuration fields.

Related links#

• State model: runtime API
• Base config: BaseConnection
• Guide: Connections

Config slots#

These slots are top-level fields of the connection's entry in connections. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.

{
    uri: 'https://mysite.com/path/to/hub.txt',
    locationType: 'UriLocation',
  }