Config guide

How to configure the config.json that drives a session. For copy-paste recipes, see the Cookbook.

Core configuration#

• config.json format
• Assemblies
• Tracks
• Authentication
• Config slot types
• Connections
• FromConfig adapters
• Plugins
• Supported file types
• Text searching

Track types#

• Alignments track
• GWAS track
• Hi-C track
• MAF track
• Multi-quantitative tracks
• Quantitative tracks
• Synteny track
• Variant track

Callbacks#

• Customizing feature colors
• Customizing feature details
• Using jexl callbacks

Appearance#

• Coloring/theming
• Default session
• Hierarchical track selector

Deployment#

• Avoiding stale config
• Deploying JBrowse Web
• Disabling analytics
• Serving data files