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VariantFeatureWidget

Auto-generated @jbrowse/mobx-state-tree API for the current JBrowse release — see pluggable elements for concepts. Provided by the variants plugin. View source.

Feature-details widget for a VCF variant, extending the base feature widget with variant-specific fields such as genotypes and INFO.

Members a composed model contributes are listed here too, so these tables are the whole surface.

Properties

MemberDescriptionDefined by
type
type: types.literal('VariantFeatureWidget')		VariantFeatureWidget
descriptions
descriptions: types.frozen<Descriptions | undefined>()		VariantFeatureWidget
id
id: ElementId		BaseFeatureWidget
featureData
featureData: types.optional(
        types.frozen<MaybeSerializedFeat>(),
        undefined,
      )
BaseFeatureWidget
unformattedFeatureData
unformattedFeatureData: types.optional(
        types.frozen<MaybeSerializedFeat>(),
        undefined,
      )
BaseFeatureWidget
view
view: types.safeReference(
        pluginManager.pluggableMstType('view', 'stateModel'),
      )
BaseFeatureWidget
track
track: types.safeReference(
        pluginManager.pluggableMstType('track', 'stateModel'),
      )
BaseFeatureWidget
trackId
trackId: types.maybe(types.string)		BaseFeatureWidget
trackType
trackType: types.maybe(types.string)		BaseFeatureWidget
maxDepth
maxDepth: types.maybe(types.number)		BaseFeatureWidget
sequenceFeatureDetails
sequenceFeatureDetails: types.optional(SequenceFeatureDetailsF(), {})
BaseFeatureWidget

Volatiles

MemberDescriptionDefined by
error
error: undefined		BaseFeatureWidget
sequenceHoverPosition
sequenceHoverPosition: undefined		genomic base currently hovered in this widget's sequence panel, read by the LGV crosshair overlayBaseFeatureWidget

Actions

MemberDescriptionDefined by
setSequenceHoverPosition
(pos: SequenceHoverPosition | undefined) => void		BaseFeatureWidget
setFeatureData
(featureData: SimpleFeatureSerialized) => void		BaseFeatureWidget
clearFeatureData
() => void		BaseFeatureWidget
setFormattedData
(feat: SimpleFeatureSerialized) => void		BaseFeatureWidget
setTrackInfo
(type?: string | undefined, trackId?: string | undefined) => void
BaseFeatureWidget
setMaxDepth
(maxDepth?: number | undefined) => void		BaseFeatureWidget
setError
(e: unknown) => void		BaseFeatureWidget