BedGraphAdapter

Auto-generated config schema for the current JBrowse release — see the config guide for concepts. Provided by the bed plugin. View source.

Example usage#

{
  type: 'QuantitativeTrack',
  trackId: 'my_track',
  name: 'My track',
  assemblyNames: ['hg38'],
  adapter: {
    type: 'BedGraphAdapter',
    uri: 'https://example.com/signal.bedGraph',
  },
}

See the Config slots section below for all available configuration fields.

used to load plain-text bedGraph signal files. Loads the whole file into memory, so prefer the BedGraphTabixAdapter for large files.

Related links#

• Track: QuantitativeTrack
• Display: LinearWiggleDisplay
• Guide: Quantitative tracks
• Guide: Supported file types

Config slots#

These slots go inside the track's adapter: "adapter": { "type": "BedGraphAdapter", ... }. It also accepts the shorthand keys uri, baseUri in place of writing a location slot out. Slot types (fileLocation, frozen, ...) are explained in the config slot types reference. Slots a base configuration contributes are listed here too, so this table is the whole surface.