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DotplotDisplay

Auto-generated config schema for the current JBrowse release — see the config guide for concepts. Provided by the dotplot-view plugin. View source.

Example usage

The dot-plot rendering of a SyntenyTrack, for use inside a DotplotView (rather than the two-row LinearSyntenyDisplay or the plain-LGV LGVSyntenyDisplay) — same track config, different display type:

{
  type: 'SyntenyTrack',
  trackId: 'hg38_vs_mm10',
  name: 'hg38 vs mm10',
  assemblyNames: ['hg38', 'mm10'],
  adapter: {
    type: 'PAFAdapter',
    uri: 'https://example.com/hg38_vs_mm10.paf',
    queryAssembly: 'hg38',
    targetAssembly: 'mm10',
  },
  displays: [
    {
      type: 'DotplotDisplay',
      displayId: 'hg38_vs_mm10-DotplotDisplay',
    },
  ],
}

Overview

DotplotDisplay - Identifier

Every DotplotDisplay has a unique displayId, a required top-level field that identifies it (not one of the config slots below).