Configuration schema
Auto-generated reference for every configuration type: the slots available on
each adapter, track, display, and other config object. These pages are generated
from the configSchema definitions in the source, so they always match the
current release.
For what the format is and where it is accepted, see Config and session JSON; for how configuration fits together, start with the config guide. For the file formats each adapter reads, see supported file types.
Adapter
- AllVsAllIndexedPAFAdapter
- AllVsAllPAFAdapter
- BamAdapter
- BedAdapter
- BedGraphAdapter
- BedGraphTabixAdapter
- BedpeAdapter
- BedTabixAdapter
- BgzipFastaAdapter
- BgzipMafAdapter
- BgzipTaffyAdapter
- BigBedAdapter
- BigMafAdapter
- BigWigAdapter
- BlastTabularAdapter
- ChainAdapter
- ChromSizesAdapter
- CramAdapter
- CrisprGuideAdapter
- CytobandAdapter
- DeltaAdapter
- FromConfigAdapter
- FromConfigRegionsAdapter
- FromConfigSequenceAdapter
- GCContentAdapter
- Gff3Adapter
- Gff3TabixAdapter
- GtfAdapter
- GtfTabixAdapter
- GWASAdapter
- HicAdapter
- HtsgetBamAdapter
- IndexedFastaAdapter
- JBrowse1TextSearchAdapter
- MafTabixAdapter
- MashMapAdapter
- MCScanAnchorsAdapter
- MCScanBlocksAdapter
- MCScanSimpleAnchorsAdapter
- MotifListAdapter
- MultiWiggleAdapter
- NcbiSequenceReportAliasAdapter
- NCListAdapter
- PAFAdapter
- PairwiseIndexedPAFAdapter
- PlinkLDAdapter
- PlinkLDTabixAdapter
- RefNameAliasAdapter
- SamAdapter
- SequenceSearchAdapter
- SPARQLAdapter
- SplitVcfTabixAdapter
- StarFusionAdapter
- TrixTextSearchAdapter
- TwoBitAdapter
- UnindexedFastaAdapter
- VcfAdapter
- VcfTabixAdapter
Assembly Management
Connection
Display
- BaseLinearDisplay
- ChordVariantDisplay
- DotplotDisplay
- LDDisplay
- LDTrackDisplay
- LGVSyntenyDisplay
- LinearAlignmentsDisplay
- LinearArcDisplay
- LinearBasicDisplay
- LinearCanvasBaseDisplay
- LinearGCContentDisplay
- LinearGCContentTrackDisplay
- LinearHicDisplay
- LinearMafDisplay
- LinearManhattanDisplay
- LinearMultiRowFeatureDisplay
- LinearMultiSampleVariantDisplay
- LinearMultiSampleVariantMatrixDisplay
- LinearPairedArcDisplay
- LinearReferenceSequenceDisplay
- LinearScoreDisplay
- LinearSyntenyDisplay
- LinearVariantDisplay
- LinearWiggleDisplay
- MultiLinearWiggleDisplay
- MultiWaySyntenyDisplay
- SharedGCContentDisplay
- SharedLDDisplay
- SharedVariantDisplay
Internet Account
- BaseInternetAccount
- DropboxOAuthInternetAccount
- ExternalTokenInternetAccount
- GoogleDriveOAuthInternetAccount
- HTTPBasicInternetAccount
- OAuthInternetAccount
Root
- FormatAbout
- FormatDetails
- HierarchicalConfigSchema
- JBrowseConfiguration
- JBrowseRootConfig
- LinearGenomeViewConfigSchema
- PreferencesConfigSchema
- RpcOptions