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LinearPileupDisplay

Note: this document is automatically generated from mobx-state-tree objects in our source code. See Core concepts and intro to pluggable elements for more info

Source file​

plugins/alignments/src/LinearPileupDisplay/model.ts

extends

LinearPileupDisplay - Properties​

property: type​

// type signature
ISimpleType<"LinearPileupDisplay">
// code
type: types.literal('LinearPileupDisplay')

property: configuration​

// type signature
AnyConfigurationSchemaType
// code
configuration: ConfigurationReference(configSchema)

property: showSoftClipping​

// type signature
false
// code
showSoftClipping: false

property: mismatchAlpha​

// type signature
IMaybe<ISimpleType<boolean>>
// code
mismatchAlpha: types.maybe(types.boolean)

property: sortedBy​

// type signature
IMaybe<IModelType<{ type: ISimpleType<string>; pos: ISimpleType<number>; tag: IMaybe<ISimpleType<string>>; refName: ISimpleType<string>; assemblyName: ISimpleType<...>; }, {}, _NotCustomized, _NotCustomized>>
// code
sortedBy: types.maybe(
          types.model({
            type: types.string,
            pos: types.number,
            tag: types.maybe(types.string),
            refName: types.string,
            assemblyName: types.string,
          }),
        )

LinearPileupDisplay - Getters​

getter: rendererConfig​

// type
{ [x: string]: any; } & NonEmptyObject & { setSubschema(slotName: string, data: unknown): any; } & IStateTreeNode<AnyConfigurationSchemaType>

getter: mismatchAlphaSetting​

// type
any

LinearPileupDisplay - Methods​

method: renderReady​

// type signature
renderReady: () => boolean

method: renderPropsPre​

// type signature
renderPropsPre: () => any

method: renderProps​

// type signature
renderProps: () => any

method: trackMenuItems​

// type signature
trackMenuItems: () => (MenuDivider | MenuSubHeader | NormalMenuItem | CheckboxMenuItem | RadioMenuItem | SubMenuItem | { ...; } | { ...; } | { ...; } | { ...; })[]

LinearPileupDisplay - Actions​

action: setCurrSortBpPerPx​

// type signature
setCurrSortBpPerPx: (n: number) => void

action: updateModificationColorMap​

// type signature
updateModificationColorMap: (uniqueModifications: string[]) => void

action: setModificationsReady​

// type signature
setModificationsReady: (flag: boolean) => void

action: setSortReady​

// type signature
setSortReady: (flag: boolean) => void

action: clearSelected​

// type signature
clearSelected: () => void

action: toggleSoftClipping​

// type signature
toggleSoftClipping: () => void

action: toggleMismatchAlpha​

// type signature
toggleMismatchAlpha: () => void

action: setSortedBy​

// type signature
setSortedBy: (type: string, tag?: string) => void

action: setFeatureHeight​

overrides base from SharedLinearPileupDisplay to make sortReady false since changing feature height destroys the sort-induced layout

// type signature
setFeatureHeight: (n?: number) => void

action: reload​

// type signature
reload: () => void