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v1.7.8 Release

ยท 2 min read

We are happy to announce v1.7.8

Some highlights include

  • ~20% speed improvement for CRAM data
  • bugfix for filter-by being broken on alignments tracks in v1.7.0-v1.7.7
  • bugfix for certain methylation/modifications being drawn incorrectly on alignments tracks
  • bugfix for the "Open" button not navigating to the correct location on the LGV import form
  • improved visualization of indels in methylation/modifications mode on alignments tracks
  • skip text index query if the input is a loc string, resulting in quicker navigation

Screenshots showing the new viewing of indels when viewing methylation

Before

After

See the release notes for details

Downloadsโ€‹

To install JBrowse 2 for the web, you can download the link above, or you can use the JBrowse CLI to automatically download the latest version. See the JBrowse web quick start for more details.

See "Packages in this release" in the changelog for links to packages published on NPM.

1.7.8 (2022-05-20)โ€‹

Packages in this release

PackageDownload
@jbrowse/plugin-alignmentshttps://www.npmjs.com/package/@jbrowse/plugin-alignments
@jbrowse/plugin-confighttps://www.npmjs.com/package/@jbrowse/plugin-config
@jbrowse/plugin-dotplot-view
@jbrowse/plugin-legacy-jbrowsehttps://www.npmjs.com/package/@jbrowse/plugin-legacy-jbrowse
@jbrowse/plugin-linear-comparative-view
@jbrowse/plugin-linear-genome-viewhttps://www.npmjs.com/package/@jbrowse/plugin-linear-genome-view
@jbrowse/desktop
@jbrowse/imghttps://www.npmjs.com/package/@jbrowse/img
@jbrowse/react-circular-genome-viewhttps://www.npmjs.com/package/@jbrowse/react-circular-genome-view
@jbrowse/react-linear-genome-viewhttps://www.npmjs.com/package/@jbrowse/react-linear-genome-view
@jbrowse/web

๐Ÿš€ Enhancementโ€‹

๐Ÿ› Bug Fixโ€‹

  • #2969 Fix link on yeast synteny demo and fix CIGAR rendering on dotplot (@cmdcolin)
  • #2964 Fix crash displaying modifications called on softclipped regions of reads (@cmdcolin)
  • #2965 Fix filter functionality on pileup tracks (@cmdcolin)
  • #2953 Fix "Open" button on LGV ImportForm (@cmdcolin)
  • #2952 Fix read vs ref not finding primary alignment on certain CRAM files (@cmdcolin)
  • #2951 Fix viewing soft/hardclip indicator in some regions (@cmdcolin)

๐Ÿ“ Documentationโ€‹

๐Ÿ  Internalโ€‹

Committers: 2โ€‹