We are happy to announce v1.7.8
Some highlights include
- ~20% speed improvement for CRAM data
- bugfix for filter-by being broken on alignments tracks in v1.7.0-v1.7.7
- bugfix for certain methylation/modifications being drawn incorrectly on alignments tracks
- bugfix for the "Open" button not navigating to the correct location on the LGV import form
- improved visualization of indels in methylation/modifications mode on alignments tracks
- skip text index query if the input is a loc string, resulting in quicker navigation
Screenshots showing the new viewing of indels when viewing methylation
Before
After
See the release notes for details
Downloads
To install JBrowse 2 for the web, you can download the link above, or you can use the JBrowse CLI to automatically download the latest version. See the JBrowse web quick start for more details.
1.7.8 (2022-05-20)
🚀 Enhancement
- #2970 Draw indels in modifications/methylation mode (@cmdcolin)
- #2961 Add more visible pileup mismatches when zoomed out (@cmdcolin)
- #2960 Avoid performing a text index search if input looks like a locstring (@cmdcolin)
- #2954 Support in-memory GFF3 and GTF in JBrowse 1 connection (@garrettjstevens)
- #2947 Optimization for SNPCoverageAdapter and CRAM parsing (@cmdcolin)
🐛 Bug Fix
- #2969 Fix link on yeast synteny demo and fix CIGAR rendering on dotplot (@cmdcolin)
- #2964 Fix crash displaying modifications called on softclipped regions of reads (@cmdcolin)
- #2965 Fix filter functionality on pileup tracks (@cmdcolin)
- #2953 Fix "Open" button on LGV ImportForm (@cmdcolin)
- #2952 Fix read vs ref not finding primary alignment on certain CRAM files (@cmdcolin)
- #2951 Fix viewing soft/hardclip indicator in some regions (@cmdcolin)
📝 Documentation
🏠 Internal
- #2955 Re-enable eslint autofix for prettier rules (@garrettjstevens)
Committers: 2
- Colin Diesh (@cmdcolin)
- Garrett Stevens (@garrettjstevens)