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v1.5.1 Release

· 4 min read

This is the release of v1.5.1 with a bunch of small improvements and bugfixes, including...

Cytoband overview

We can now display the cytoband data for your genome assembly in the linear genome view overview, and this will now be available for hg19 and hg38 assembly configs on JBrowse Desktop

This can also appear in SVG exports

Plugins can integrate with "Add track" workflow better

Plugins that register new adapter types can integrate with the "Add track" workflow by registering themselves for a particular file type or file extension with the Core-guessAdapterForLocation

Open plaintext FASTA file on JBrowse desktop

Users can now open a plain FASTA instead of an indexed FASTA on JBrowse desktop, and it will create a .fai index on the fly

Downloads

To install JBrowse 2 for the web, you can download the link above, or you can use the JBrowse CLI to automatically download the latest version. See the JBrowse web quick start for more details.

See "Packages in this release" in the changelog for links to packages published on NPM.

1.5.1 (2021-11-04)

Packages in this release

PackageDownload
@jbrowse/corehttps://www.npmjs.com/package/@jbrowse/core
@jbrowse/plugin-alignmentshttps://www.npmjs.com/package/@jbrowse/plugin-alignments
@jbrowse/plugin-authentication
@jbrowse/plugin-bedhttps://www.npmjs.com/package/@jbrowse/plugin-bed
@jbrowse/plugin-breakpoint-split-view
@jbrowse/plugin-confighttps://www.npmjs.com/package/@jbrowse/plugin-config
@jbrowse/plugin-data-managementhttps://www.npmjs.com/package/@jbrowse/plugin-data-management
@jbrowse/plugin-dotplot-view
@jbrowse/plugin-gff3https://www.npmjs.com/package/@jbrowse/plugin-gff3
@jbrowse/plugin-gtfhttps://www.npmjs.com/package/@jbrowse/plugin-gtf
@jbrowse/plugin-hic
@jbrowse/plugin-legacy-jbrowsehttps://www.npmjs.com/package/@jbrowse/plugin-legacy-jbrowse
@jbrowse/plugin-linear-comparative-view
@jbrowse/plugin-linear-genome-viewhttps://www.npmjs.com/package/@jbrowse/plugin-linear-genome-view
@jbrowse/plugin-rdf
@jbrowse/plugin-sequencehttps://www.npmjs.com/package/@jbrowse/plugin-sequence
@jbrowse/plugin-spreadsheet-view
@jbrowse/plugin-sv-inspector
@jbrowse/plugin-trixhttps://www.npmjs.com/package/@jbrowse/plugin-trix
@jbrowse/plugin-variantshttps://www.npmjs.com/package/@jbrowse/plugin-variants
@jbrowse/plugin-wigglehttps://www.npmjs.com/package/@jbrowse/plugin-wiggle
@jbrowse/clihttps://www.npmjs.com/package/@jbrowse/cli
@jbrowse/desktop
@jbrowse/imghttps://www.npmjs.com/package/@jbrowse/img
jbrowse-predefined-sessions
@jbrowse/react-circular-genome-viewhttps://www.npmjs.com/package/@jbrowse/react-circular-genome-view
@jbrowse/react-linear-genome-viewhttps://www.npmjs.com/package/@jbrowse/react-linear-genome-view
@jbrowse/web

🚀 Enhancement

  • core
    • #2488 Improve usability of the search result autocomplete when typing in via keyboard (@cmdcolin)
    • #2267 Add cytoband to overview scale bar in LGV (@cmdcolin)
    • #2447 Drawer widget tooltips and use position: fixed on fab (@cmdcolin)
    • #2299 Add new pluggable element type and properties to adapter type for registering adapter association with 'add track' workflow (@carolinebridge-oicr)
  • Other

🐛 Bug Fix

  • Other
    • #2494 Add polyfill for text-index compatibility with node 10 (@cmdcolin)
    • #2492 Fix ability to open breakpoint split view from a BEDPE row in SV inspector (@cmdcolin)
    • #2480 Fix refName renaming on VcfAdapter for files that don't have ##contig lines (@cmdcolin)
    • #2469 Fix embedded crash when opening dialogs (@garrettjstevens)
    • #2451 Fix issue with intermittent text-index failures and improve speed (@cmdcolin)
    • #2439 Fix adding plugins on desktop (@cmdcolin)
    • #2426 Fix CLI create/upgrade failing to find the latest release (@cmdcolin)
  • core
    • #2457 Fix linear synteny view import form failure (@cmdcolin)
    • #2444 Fix crash when chromSizesLocation not specified when loading TwoBitAdapter in GUI (@cmdcolin)

📝 Documentation

🏠 Internal

Committers: 4